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How to Register Your SaaS Business: LLC, C-Corp, S-Corp, or Sole Proprietorship?

Before you get started on that logo or get into coding your work, remember the important groundwork that must be done. Establish your SaaS business to avoid any penalties. 

 

It’s not exactly glamorous to register your business, but trust us, as a founder, it’s necessary for your long-term success. We’ve outlined everything you need to know in a step by step format. With this guide, you’ll learn about:

  • What legal structures are available for your business
  • How to register your business and obtain an EIN
  • How to set up your SaaS business with payment processing and sales tax management 
Note

This guide is not a substitute for professional legal and financial advice but does provide valuable information and a place for you to start. Laws and regulations are complex depending on many variables. If uncertain, consult with experts to ensure your business is fully compliant and protected.

Step 1

Gather Data on Your Existing Customer Base

First of all, select the structure that aligns with your business needs. Choosing the right legal structure is a big decision that affects your taxes, liability, and fundraising potential. The most common options are:

  • Sole Proprietorship: For the most simple option, choose to have your business legally one and the same. It’s also  inexpensive to set up and gives you complete control. But your personal assets are at risk if the business faces any legal or financial trouble.
  • Partnership: If you have any partnerships, this allows you to share responsibilities and resources. However, like sole proprietorship, it comes with unlimited personal liability for all partners if disagreements occur.
  • Limited Liability Company (LLC): This is an admired choice for startups due to it’s limited liability protection for its owners. In this case, your personal assets are typically shielded from business debts or liabilities. Profits are taxed at the individual level, giving flexibility with management and taxation.
  • C Corporation: This is favored for businesses looking for significant growth and seeking venture capital investment. It has limited liability and is easier for fundraising through stock issuance. Yet, the downside of double taxation is present so profits are taxed both at the corporate and individual levels.
  • S Corporation: With the combination of limited liability of a corporation and the pass-through taxation of an LLC, profits are taxed at the individual level. Unfortunately, S Corporations have strict eligibility requirements, including limits on the number of shareholders and who can be a shareholder.

 

To help you with your decision, let’s look at the pros and cons of each structure:

Type of Structure

Positives

Negatives

Recommended 

Sole Proprietorship

Easy, less costly to set up, gives control

Endless personal liability with assets at risk, fundraising options challenged

Small, businesses with low risk and single owner

Partnership

Easy to create, shared responsibility and resources

Uncapped personal liability for everyone, increased chance of disputes 

Businesses with several owners that share profits and losses

Limited Liability Company (LLC)

Protection is limited, but flexible management, pass-through taxation (profits taxed at the individual level)

Complicated proprietorship, potential for self-employment taxes

Startups, small businesses seeking liability protection

C Corporation

Liability is limited, easier to raise capital, potential for stock options

Taxes are doubles(profits taxed at corporate and individual levels), more admin work

High-growth startups seeking venture capital

S Corporation

Liability is less, pass-through taxation, potential for stock options (limited to 100 shareholders)

Conservative eligibility requirements (US citizens/residents only), limited to one class of stock

Small businesses that meet the S Corp criteria and want to avoid double taxation

Note

If you’re unclear about the structure that suits your business but need to start selling quickly, partner with a Merchant of Record (MoR). We work with SaaS businesses and individuals and greatly simplify the entire process. To begin, you need a functional website with a privacy policy, refund policy, and terms of service, as well as a great product.  

Step 2

Name Your Baby (Your Business, That Is)

First impressions matter so you don’t want to mess it up! This is where you can show your brand identity by choosing a name that speaks to your intended audience. Try the following to get started:

  • Brainstorm: Be creative and think outside the box. Consider your brand identity and what your shoppers will find relatable.
  • Check Availability:  Do a little digging on your state’s business registry website and Google to see if your new moniker is already in use.
  • Secure the Domain: Once you’ve found the perfect name, be sure to get the domain name that matches. This will help customers find you quicker online and gives professional vibes. Check domain availability on sites like GoDaddy or Namecheap.

 

Choose a name you love that aligns with your brand and don’t overthink it. You can change it later if needed.

Step 3

Obtain an Identification Number

Now, to make things legal. Registering and getting an identification number formally establishes your company as a legal structure: this is necessary for when you open a bank account, pay taxes, and for protecting yourself from personal liability.

 

Find your state’s Secretary of State website and use it to file the necessary paperwork. If you’re registering an LLC, you’ll need to file Articles of Organization, while corporations will require Articles of Incorporation. Since each state has its own fees and requirements,  be sure to follow the instructions as they ask.

 

Next, secure your Employer Identification Number (EIN) from the IRS. This unique nine-digit number will be used for tax purposes and is required for various tasks, like opening a bank account and filing taxes. It’s easy to apply for an EIN online through the IRS website for free. If you are a non-US resident, you can apply by phone, fax, or mail using Form SS-4.

Step 4

Obtain Necessary Licenses and Permits

This step is much like creating a rulebook for your business. Think of your internal documents as a safety net to avoid disagreements later on. Admittedly not the most exciting part, but nevertheless very important!

 

Research the licenses and permits you’ll need to operate your SaaS business in your location. The SBA website has helpful resources for obtaining licenses and permits. Common licenses include a general business license, sales tax permit, and professional licenses (if applicable).

  • For LLCs, an Operating Agreement is necessary: This document details who owns what percentage of the company, how profits and losses are distributed, who is responsible for decisions, and the process if a member wants to leave or join. You can find free LLC Operating Agreement Templates on websites such as eForms or Forbes Advisor.
  • Bylaws: If you’ve chosen to form a corporation, Bylaws are required. They define how your company is governed, details about shareholder meetings, voting procedures, and the responsibilities of directors and officers. There are online resources that offer free bylaws templates, such as LawDepot and Rocket Lawyer.
  • Partnership Agreement: This agreement outlines each partner’s rights and responsibilities, how profits are shared, and what happens if a partner leaves. There are free Partnership templates on websites such as PandaDoc and Docracy.

 

Even though there are templates online, consider having an attorney review them to be sure they’re accurate and legally sound. This is an investment that could prevent problems in the future.

Note

Keep copies of all registration documents, tax IDs, licenses, and permits in a secure location. You’ll need them for future reference, especially for tax purposes and other legal matters.

Step 5

Open a Bank Account

While taxes aren’t any fun, they’re part of life; but with proper planning, you can minimize the chances of costly surprises. Start by investigating the federal, state, and local taxes applicable to your SaaS business. Different structures and locations of business have a variety of tax obligations. To learn more about SaaS sales taxes head over to our detailed guide. You’ll better understand when, where, and how to calculate, file, and remit your sales taxes. 

 

Calculate what you’ll owe in taxes and set aside money periodically to avoid struggling to pay a large tax time bill. If you’re self-employed or a business owner, you’ll have to make estimated tax payments quarterly or monthly

 

If you don’t have the expertise in taxes, consult with a professional to help you file. Since countries have their own tax thresholds and regulations, a mistake can have serious consequences. Having an expert ensures compliance and decreases the chance of any penalties. 

Actionable Tip

To avoid the complication sales tax compliance brings, opt for a Merchant of Record (MoR). An MoR manages the billing process, including sales tax calculation, collection, remittance, and compliance with local regulations, giving you the time to grow your SaaS business.

Step 6

Select Your Payment Processor

Finding a reliable, secure payment solution is fundamental for any business that wants to get paid. For SaaS businesses, this is particularly important, because you’ll  be handling recurring payments and subscriptions. So, before you start accepting payments online:  

  • Choose a Payment Processor: Research different solutions and find one that satisfies all your business needs. The common options are divided into PSPs and MoRs. Think about transaction fees, supported payment methods, ease of integration with your website or platform, and customer support.
  • Integrate: Once you’ve selected your processor, integrate it with your website or app. Test the checkout process to be sure it is frictionless and user-friendly, clearly displays accepted payment methods, and has 24/7 customer support. 
  • Protect Your Customers: Security must be prioritized when it comes to payment processing. To keep your customers’ sensitive financial information safe, be sure the chosen system is Level 1 PCI DSS compliant. 
Tip

Partnering with a Merchant of Record (MoR) like PayPro Global simplifies payment processing, subscription management, and global compliance, making it easier to get paid and scale your business. We offer fully personalized checkouts, no-code integration and ensure Level 1 PCI DSS compliance.

Step 7

Compliance and Review

After you’ve registered your SaaS business there is still more to do. Now avoid any trouble and remain compliant to be in good standing with the government. Set reminders for deadlines and consider using professionals to help you with compliance tasks.

  • Annual Filings: Most states require annual reports so make sure to stay on top of these to avoid penalties.
  • Tax Deadlines: Use a calendar for important tax deadlines and file your returns on time.
  • Legal Updates: Laws and regulations can change, so keep informed about things that affect your business.

Conclusion

Starting and running a SaaS business comes with its share of paperwork and legal hurdles. While this might seem like a lot, remember you don’t have to do it all alone. Find the help you need from attorneys, accountants, and any other professional when needed. If you need assistance with SaaS billing and sales taxes, we are here to help

And most importantly, don’t let the paperwork overshadow your excitement for building your SaaS empire. Focus on your vision, create a quality product, and watch your business thrive. You’ve got this!

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