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Choose the Right Payment Solution for Your SaaS

Published: March 21, 2025

To choose the right billing solution for your SaaS, you need to look closely at your business needs and research the available options. Selecting the right payment solution is critical for managing transactions, minimizing churn, and maximizing revenue. This guide provides information on essential factors to consider when making a decision. These steps allow you to consider payment solutions and assess their value on growth and customer experience.

Step 1

Determine Your Business Needs

Before you start evaluating different payment solutions, take the time to identify your specific requirements. Consider factors such as:

 

  • Company stage: Are you an indie developer or a registered business? Payment service providers (PSPs) like Stripe and Braintree typically require a registered business, while some providers, like MoR, PayPro Global, do not. Merchants of Record (MoRs) provide services relevant to individual developers and larger companies with complex requirements. 
  • Product Type: Are you offering a one-time purchase product, a subscription-based SaaS product, or a combination of both? This will determine the payment features you need.
  • Transaction volume: Do you anticipate a high volume of transactions, or are you just starting out? Solutions designed for high-performance processing may be better suited for situations with significant data volumes.
  • Average transaction value: Is your SaaS priced at a high or low price point? This can influence transaction fees.
  • International expansion: Do you plan to sell your SaaS globally? If so, you’ll need a solution that supports international payments, multi-currency transactions, and handles international tax compliance.

Free SaaS Payment Solution Essential Features Checklist

Ensure your payment solution has all the must-have features with this free checklist.

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    Security essentials

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    Subscription management

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    Dunning management

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    General Resignation

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    Tax compliance

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    and more!

Get Your FREE Checklist
Step 2

Evaluate Payment Solutions

Know the different types of payment solutions available and their key characteristics:

 

  • Payment gateways: These act as the “digital point-of-sale” for your SaaS, securely authorizing payments. Popular examples include Authorize.Net. 
  • Payment processors: These handle the behind-the-scenes work of capturing and settling funds between you and your customers. Examples include Worldpay.
  • Merchants of Record (MoRs): An MoR like PayPro Global acts as the legal seller of your SaaS, handling sales tax, VAT, and other regulatory requirements, fraud management,   especially in international markets. This strategy is used to facilitate global expansion and reducing administrative burden, with varying degrees of success.

 

Solution Type

Description

Examples

Pros

Cons

Payment Gateway

Acts as the “digital point-of-sale” for your SaaS, securely authorizing payments.

Authorize.Net

Secure payment authorization, often integrated with other tools

May require a separate payment processor

Payment Processor

Handles the behind-the-scenes work of capturing and settling funds between you and your customers.

Worldpay

Handles transaction processing and settlement

May not offer other important billing features

Merchant of Record (MoR)

Acts as the legal seller of your SaaS, handling sales tax, compliance, and other regulatory requirements, especially in international markets.

PayPro Global

Simplifies global expansion, reduces administrative burden

May have higher fees than PSPs (but overall costs may be less than using PSPs in combination with the third-party tools) 

Free SaaS Payment Solution Essential Features Checklist

Ensure your payment solution has all the must-have features with this free checklist.

  • Checkmark

    Security essentials

  • Checkmark

    Subscription management

  • Checkmark

    Dunning management

  • Checkmark

    General Resignation

  • Checkmark

    Tax compliance

  • Checkmark

    and more!

Get Your FREE Checklist
Step 3

Assess Key Features

Based on your needs analysis, make a checklist of essential and desirable features for your billing solution. Look for these essential features in a billing solution:

 

  • Compatibility: Ensure the solution integrates seamlessly with your existing website or app platform (e.g., Shopify, WooCommerce, custom-built platforms).
  • The availability of diverse APIs can impact the level of integration and customization, offering flexibility.
  • A dunning management system can automate the process of collecting failed payments, potentially reducing involuntary churn. Look for features like automated email reminders and flexible retry schedules.
  • Customer support: It is important to provide a strong channel for addressing payment issues in a timely manner. The team should dedicate resources to providing prompt and reliable assistance to both internal and external clients.
  • Data protection: Choose a processor with strong security measures, including PCI DSS compliance, to protect customer data.
  • Fraudulent Activity Prevention: Implementing measures like address verification, CVV checks, and velocity checks can potentially mitigate fraudulent activity.
  • Customizable checkout: Tailoring the checkout experience to individual customer preferences may potentially influence conversion rates.
  • Localization: Translations of the checkouts and emails.
  • Payment methods and currencies: Allow customers to choose from multiple payment methods (e.g., credit cards, PayPal, Alipay, mobile wallets, purchase orders) and currencies for their convenience. 
  • Subscription management: Tools to manage subscriptions, including sign-ups, upgrades, downgrades, cancellations, proration, and recurring billing. Ensure the solution supports different subscription models (e.g., fixed, usage-based), free trials, discounts, and various subscription types (manual, automatic, hybrid).
  • Sales tax management: Most SaaS businesses are required to collect and remit sales tax in various jurisdictions based on customer location. Choose a solution that automates sales tax calculation, collection, and remittance to avoid compliance headaches. MoRs may be considered due to their sales tax compliance capabilities.
  • License key management: If your SaaS requires license keys, look for a solution that can generate, manage, and distribute them securely.
  • Chargeback handling capabilities: Learn about various tools and processes available for efficient handling and resolution of chargebacks.
  • Invoice automation: Create customized invoices for clients through the use of automated functionalities.
  • Integrated marketing capabilities: Includes features such as coupons, discounts, opportunities for cross-selling, and promotional campaigns, which might relate to customer acquisition and retention.
  • Mobile optimization: Mobile-optimized payment options, including mobile wallets and in-app payments.
  • Analytics and data: Track subscription metrics and revenue through detailed reporting and analytics.
  • Reliability and stability: Your payment solution should be a reliable and established system with a proven track record. When choosing solutions for payment processing, consider established and well-tested options, aiming to avoid potential risks or disruptions that can affect your revenue and reputation.

Free SaaS Payment Solution Essential Features Checklist

Ensure your payment solution has all the must-have features with this free checklist.

  • Checkmark

    Security essentials

  • Checkmark

    Subscription management

  • Checkmark

    Dunning management

  • Checkmark

    General Resignation

  • Checkmark

    Tax compliance

  • Checkmark

    and more!

Get Your FREE Checklist
Step 4

Compare Pricing and Fees

Analyze the pricing and fee structure of each payment solution. Don’t just focus on transaction fees; consider all associated costs, including:

 

  • Transaction fees: Percentage-based and fixed fees per transaction.
  • Transfer fees: Costs associated with moving funds to your bank account.
  • Monthly cost: Charges incurred for platform usage on a recurring basis.
  • Chargeback fees: Fees associated with handling customer disputes.
  • International transaction fees: Fees for processing payments in different currencies.
  • Alternative Payment Method fees: Include any transaction fees associated with digital wallets or other alternative payment methods you plan to offer.

 

Be aware of any fees that may apply, including hidden fees.

Note

MoRs and PSPs have different fee structures, with MoRs often including taxes management, compliance, and management of chargebacks in their fees, while PSPs may charge these separately or don’t provide such features (meaning you’ll need to pay additionally for 3rd party tools) 

Conclusion

Choosing the right payment solution for your SaaS requires careful consideration of your business needs, budget, and growth plans. Evaluating key features, comparing pricing, and comprehending the functions of payment gateways, processors, and MoRs contribute to well-informed choices that promote sustained success. While security is essential, the ideal payment solution may also affect recurring revenue and customer satisfaction.

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